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rems endpoint updates #38

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smalho01 merged 2 commits into from
Aug 25, 2022
Merged

rems endpoint updates #38

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de5457a
rems endpoint updates
smalho01 Aug 24, 2022
8dd763c
bug fix on met sub reqs parent relation
smalho01 Aug 25, 2022
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41 changes: 32 additions & 9 deletions server/src/main/java/org/hl7/davinci/endpoint/rems/DatabaseInit.java
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Original file line number Diff line number Diff line change
Expand Up @@ -69,12 +69,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TuralioPatientEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TuralioPatientQuestionnaireResource = JacksonUtil.toJsonNode(TuralioPatientQuestionnaire);
TuralioPatientEnrollmentResource.setResource(TuralioPatientQuestionnaireResource);
TuralioPatientEnrollmentResource.setId("turalio-patient-enrollment");
TuralioPatientEnrollmentResource.setId("TuralioRemsPatientEnrollment");
remsFhirRepository.save(TuralioPatientEnrollmentResource);
TuralioPatientEnrollmentRequirement.setName("Patient Enrollment");
TuralioPatientEnrollmentRequirement.setCreateNewCase(true);
TuralioPatientEnrollmentRequirement.setResource(TuralioPatientEnrollmentResource);
TuralioPatientEnrollmentRequirement.setDescription("Submit Patient Enrollment form to the REMS Administrator");
TuralioPatientEnrollmentRequirement.setDrug(turalio);
TuralioPatientEnrollmentRequirement.setStakeholder("patient");
requirementRepository.save(TuralioPatientEnrollmentRequirement);

// prescriber enrollment form requirement
Expand All @@ -84,12 +86,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TuralioPrescriberEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TuralioPrescriberQuestionnaireResource = JacksonUtil.toJsonNode(TuralioPrescriberQuestionnaire);
TuralioPrescriberEnrollmentResource.setResource(TuralioPrescriberQuestionnaireResource);
TuralioPrescriberEnrollmentResource.setId("turalio-prescriber-enrollment");
TuralioPrescriberEnrollmentResource.setId("TuralioPrescriberEnrollmentForm");
remsFhirRepository.save(TuralioPrescriberEnrollmentResource);
TuralioPrescriberEnrollmentRequirement.setName("Prescriber Enrollment");
TuralioPrescriberEnrollmentRequirement.setCreateNewCase(false);
TuralioPrescriberEnrollmentRequirement.setResource(TuralioPrescriberEnrollmentResource);
TuralioPrescriberEnrollmentRequirement.setDescription("Submit Prescriber Enrollment form and training certification to the REMS Administrator");
TuralioPrescriberEnrollmentRequirement.setDrug(turalio);
TuralioPrescriberEnrollmentRequirement.setStakeholder("prescriber");
requirementRepository.save(TuralioPrescriberEnrollmentRequirement);

// prescriber knowledge assessment / certification sub-requirement
Expand All @@ -99,12 +103,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TuralioPrescriberKnowledgeResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TuralioPrescriberKnowledgeQuestionnaireResource = JacksonUtil.toJsonNode(TuralioPrescriberKnowledgeQuestionnaire);
TuralioPrescriberKnowledgeResource.setResource(TuralioPrescriberKnowledgeQuestionnaireResource);
TuralioPrescriberKnowledgeResource.setId("turalio-prescriber-knowledge-check");
TuralioPrescriberKnowledgeResource.setId("TuralioPrescriberKnowledgeAssessment");
remsFhirRepository.save(TuralioPrescriberKnowledgeResource);
TuralioPrescriberCertificationRequirement.setName("Prescriber Knowledge Assessment");
TuralioPrescriberCertificationRequirement.setCreateNewCase(false);
TuralioPrescriberCertificationRequirement.setResource(TuralioPrescriberKnowledgeResource);
TuralioPrescriberCertificationRequirement.setDescription("Submit Prescriber Knowledge Assessment Form to REMS Administrator to receive certification");
TuralioPrescriberCertificationRequirement.setParentRequirement(TuralioPrescriberEnrollmentRequirement);
TuralioPrescriberCertificationRequirement.setStakeholder("prescriber");
// prescriberCertificationRequirement.setDrug(turalio);
requirementRepository.save(TuralioPrescriberCertificationRequirement);

Expand All @@ -116,12 +122,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TuralioPharmacistEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TuralioPharmacistQuestionnaireResource = JacksonUtil.toJsonNode(TuralioPharmacistQuestionnaire);
TuralioPharmacistEnrollmentResource.setResource(TuralioPharmacistQuestionnaireResource);
TuralioPharmacistEnrollmentResource.setId("turalio-pharmacist-enrollment");
TuralioPharmacistEnrollmentResource.setId("TuralioPharmacistEnrollment");
remsFhirRepository.save(TuralioPharmacistEnrollmentResource);
TuralioPharmacistEnrollmentRequirement.setName("Pharmacist Enrollment");
TuralioPharmacistEnrollmentRequirement.setCreateNewCase(false);
TuralioPharmacistEnrollmentRequirement.setResource(TuralioPharmacistEnrollmentResource);
TuralioPharmacistEnrollmentRequirement.setDescription("Submit Pharmacist Enrollment form and training certification to the REMS Administrator");
TuralioPharmacistEnrollmentRequirement.setDrug(turalio);
TuralioPharmacistEnrollmentRequirement.setStakeholder("pharmacist");
requirementRepository.save(TuralioPharmacistEnrollmentRequirement);


Expand All @@ -135,12 +143,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPatientEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TIRFPatientQuestionnaireResource = JacksonUtil.toJsonNode(TIRFPatientQuestionnaire);
TIRFPatientEnrollmentResource.setResource(TIRFPatientQuestionnaireResource);
TIRFPatientEnrollmentResource.setId("TIRF-patient-enrollment");
TIRFPatientEnrollmentResource.setId("TIRFRemsPatientEnrollment");
remsFhirRepository.save(TIRFPatientEnrollmentResource);
TIRFPatientEnrollmentRequirement.setName("Patient Enrollment");
TIRFPatientEnrollmentRequirement.setCreateNewCase(true);
TIRFPatientEnrollmentRequirement.setResource(TIRFPatientEnrollmentResource);
TIRFPatientEnrollmentRequirement.setDescription("Submit Patient Enrollment form to the REMS Administrator");
TIRFPatientEnrollmentRequirement.setDrug(tirf);
TIRFPatientEnrollmentRequirement.setStakeholder("patient");
requirementRepository.save(TIRFPatientEnrollmentRequirement);

// prescriber enrollment form requirement
Expand All @@ -150,12 +160,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPrescriberEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TIRFPrescriberQuestionnaireResource = JacksonUtil.toJsonNode(TIRFPrescriberQuestionnaire);
TIRFPrescriberEnrollmentResource.setResource(TIRFPrescriberQuestionnaireResource);
TIRFPrescriberEnrollmentResource.setId("TIRF-prescriber-enrollment");
TIRFPrescriberEnrollmentResource.setId("TIRFPrescriberEnrollmentForm");
remsFhirRepository.save(TIRFPrescriberEnrollmentResource);
TIRFPrescriberEnrollmentRequirement.setName("Prescriber Enrollment");
TIRFPrescriberEnrollmentRequirement.setCreateNewCase(false);
TIRFPrescriberEnrollmentRequirement.setResource(TIRFPrescriberEnrollmentResource);
TIRFPrescriberEnrollmentRequirement.setDescription("Submit Prescriber Enrollment form to the REMS Administrator");
TIRFPrescriberEnrollmentRequirement.setDrug(tirf);
TIRFPrescriberEnrollmentRequirement.setStakeholder("prescriber");
requirementRepository.save(TIRFPrescriberEnrollmentRequirement);

// prescriber knowledge assessment / certification sub-requirement
Expand All @@ -165,12 +177,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPrescriberKnowledgeResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TIRFPrescriberKnowledgeQuestionnaireResource = JacksonUtil.toJsonNode(TIRFPrescriberKnowledgeQuestionnaire);
TIRFPrescriberKnowledgeResource.setResource(TIRFPrescriberKnowledgeQuestionnaireResource);
TIRFPrescriberKnowledgeResource.setId("TIRF-prescriber-knowledge-check");
TIRFPrescriberKnowledgeResource.setId("TIRFPrescriberKnowledgeAssessment");
remsFhirRepository.save(TIRFPrescriberKnowledgeResource);
TIRFPrescriberCertificationRequirement.setName("Prescriber Knowledge Assessment");
TIRFPrescriberCertificationRequirement.setCreateNewCase(false);
TIRFPrescriberCertificationRequirement.setResource(TIRFPrescriberKnowledgeResource);
TIRFPrescriberCertificationRequirement.setDescription("Submit Prescriber Knowledge Assessment form to the REMS Administrator to receive certification");
TIRFPrescriberCertificationRequirement.setParentRequirement(TIRFPrescriberEnrollmentRequirement);
TIRFPrescriberCertificationRequirement.setStakeholder("prescriber");
//TIRFPrescriberCertificationRequirement.setDrug(tirf);
requirementRepository.save(TIRFPrescriberCertificationRequirement);

Expand All @@ -182,12 +196,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPharmacistEnrollmentResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TIRFPharmacistQuestionnaireResource = JacksonUtil.toJsonNode(TIRFPharmacistQuestionnaire);
TIRFPharmacistEnrollmentResource.setResource(TIRFPharmacistQuestionnaireResource);
TIRFPharmacistEnrollmentResource.setId("TIRF-pharmacist-enrollment");
TIRFPharmacistEnrollmentResource.setId("TIRFPharmacistEnrollmentForm");
remsFhirRepository.save(TIRFPharmacistEnrollmentResource);
TIRFPharmacistEnrollmentRequirement.setName("Pharmacist Enrollment");
TIRFPharmacistEnrollmentRequirement.setCreateNewCase(false);
TIRFPharmacistEnrollmentRequirement.setResource(TIRFPharmacistEnrollmentResource);
TIRFPharmacistEnrollmentRequirement.setDescription("Submit Pharmacist Enrollment form to the REMS Administrator");
TIRFPharmacistEnrollmentRequirement.setDrug(tirf);
TIRFPharmacistEnrollmentRequirement.setStakeholder("pharmacist");
requirementRepository.save(TIRFPharmacistEnrollmentRequirement);

// pharmacist knowledge assessment / certification sub-requirement
Expand All @@ -198,12 +214,14 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPharmacistKnowledgeResource.setResourceType(ResourceType.Questionnaire.toString());
JsonNode TIRFPharmacistKnowledgeQuestionnaireResource = JacksonUtil.toJsonNode(TIRFPharmacistKnowledgeQuestionnaire);
TIRFPharmacistKnowledgeResource.setResource(TIRFPharmacistKnowledgeQuestionnaireResource);
TIRFPharmacistKnowledgeResource.setId("TIRF-pharmacist-knowledge-check");
TIRFPharmacistKnowledgeResource.setId("TIRFPharmacistKnowledgeAssessment");
remsFhirRepository.save(TIRFPharmacistKnowledgeResource);
TIRFPharmacistCertificationRequirement.setName("Pharmacist Knowledge Assessment");
TIRFPharmacistCertificationRequirement.setCreateNewCase(false);
TIRFPharmacistCertificationRequirement.setResource(TIRFPharmacistKnowledgeResource);
TIRFPharmacistCertificationRequirement.setDescription("Submit Pharmacist Knowledge Assessment form to the REMS Administrator to receive certification");
TIRFPharmacistCertificationRequirement.setParentRequirement(TIRFPharmacistEnrollmentRequirement);
TIRFPharmacistCertificationRequirement.setStakeholder("pharmacist");
//TIRFPharmacistCertificationRequirement.setDrug(tirf);
requirementRepository.save(TIRFPharmacistCertificationRequirement);

Expand All @@ -226,6 +244,8 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TuralioPharmacistCredentialsResource.setId("Turalio-pharmacist-organization");
remsFhirRepository.save(TuralioPharmacistCredentialsResource);
TuralioPharmacistEnrollmentMetRequirement.setCompleted(true);
String turalioFunctionalId = TuralioPharmacistOrganizationResource.get("resourceType").textValue() + "/" + TuralioPharmacistOrganizationResource.get("id").textValue();
TuralioPharmacistEnrollmentMetRequirement.setFunctionalId(turalioFunctionalId);
TuralioPharmacistEnrollmentMetRequirement.setRequirement(TuralioPharmacistEnrollmentRequirement);
TuralioPharmacistEnrollmentMetRequirement.setCompletedRequirement(TuralioPharmacistCredentialsResource);
metRequirementRepository.save(TuralioPharmacistEnrollmentMetRequirement);
Expand All @@ -244,13 +264,16 @@ CommandLineRunner initDatabase(DrugsRepository repository, RemsFhirRepository re
TIRFPharmacistCredentialsResource.setId("TIRF-pharmacist-organization");
remsFhirRepository.save(TIRFPharmacistCredentialsResource);
TIRFPharmacistEnrollmentMetRequirement.setCompleted(true);
String TIRFFunctionalId = TIRFPharmacistOrganizationResource.get("resourceType").textValue() + "/" + TIRFPharmacistOrganizationResource.get("id").textValue();
TIRFPharmacistEnrollmentMetRequirement.setFunctionalId(TIRFFunctionalId);
TIRFPharmacistEnrollmentMetRequirement.setRequirement(TIRFPharmacistEnrollmentRequirement);
TIRFPharmacistEnrollmentMetRequirement.setCompletedRequirement(TIRFPharmacistCredentialsResource);
metRequirementRepository.save(TIRFPharmacistEnrollmentMetRequirement);

// pharmacist knowledge form requirement
MetRequirement TIRFPharmacistCertificationMetRequirement = new MetRequirement();
TIRFPharmacistCertificationMetRequirement.setCompleted(true);
TIRFPharmacistCertificationMetRequirement.setFunctionalId(TIRFFunctionalId);
TIRFPharmacistCertificationMetRequirement.setRequirement(TIRFPharmacistCertificationRequirement);
TIRFPharmacistCertificationMetRequirement.setParentMetRequirement(TIRFPharmacistEnrollmentMetRequirement);
metRequirementRepository.save(TIRFPharmacistCertificationMetRequirement);
Expand Down
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