Bump actions/download-artifact from 4 to 5#4
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Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 4 to 5. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v4...v5) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
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Superseded by #19. |
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October 27, 2025 14:33
cshenry
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Fix #1: Replace kbu.env.config.get() with kbu.env.get_config_value("section.key") throughout all skill files; document get_config(section, key) as deprecated/INI-compat. Verified against shared_env_utils.py:195,216. Fix #2: Replace fabricated KBJobUtils methods (submit, cancel, refresh, get, list, forget, summary, get_logs with real API (run_job, cancel_job, check_job, refresh_active, refresh_all, get_record, list_active, list_all, get_job_logs, cleanup). Verified against kb_job_utils/utils.py. Fix #3: Add undocumented kb_genome_utils.py methods to module-reference.md and api-summary.md: load_kbase_gene_container, object_to_features, get_ftr, ftr_to_aliases, alias_to_ftrs, object_to_proteins, add_annotations_to_object, load_genome_from_local_files, aggregate_taxonomies, create_synthetic_genome, calculate_gc_content, plus PRD-new methods by name: save_genome_object, save_assembly_from_fasta, save_genome_with_assembly, validate_genome, build_genome_from_fasta_gff. Fix #4: Add Injecting SDK Clients in Notebook Contexts subsection to patterns.md documenting kbu.callback.set_callback_client(name, client) injection hook. Fix #5: Add installed_clients/ shipping constraint note near top of kbutillib-expert.md flagging that AssemblyUtilClient/GenomeFileUtilClient require a separate KBase SDK install; calls raise ImportError without it. Fix #6: Add /kbase-genome-expert to Related Skills in kbutillib-expert.md and a See also pointer in patterns.md callback section. Fix #7: Add KBGenomeUtilsImpl delegate note to module-reference.md (source L805, __getattr__ passthrough). Fix #8: Add ## CLI chapter to api-summary.md covering kbu jobs status/list/summary/ refresh/logs/cancel/forget/cleanup/chain submit/list/status/cancel/advance and kbu jobdaemon. All subcommands verified against src/kbutillib/cli/jobs.py, jobdaemon.py, __init__.py. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> EOF )
cshenry
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Jul 6, 2026
Implements shared TOML I/O helpers in manifest.py (read/write for both project and subproject manifests, now_utc_iso, sha256_file, partial-write helpers append_session_ref and append_notebook_entry_or_update). Adds kbu subproject subcommand group with 8-state machine (plan → p-review → build → b-review → run → synthesize → s-review → complete), full precondition validators per PRD round-2 confront table, HTML verdict comment parser, and subcommands: create, list, status, advance, set-status. Registers subproject group in CLI __init__.py; adds tomli-w >=1.0 to dependencies; adds conftest.py fixtures and 66 passing tests. Satisfies PRD kbu-start-v1 ACs #4, #5, #6, #7, #8, #32, #33, #34, #36, #42, #44. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
cshenry
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Jul 6, 2026
Rewrites /kbu-plan from a single-pass grill to the 4-step flow: Step 1 grills goals, Step 2 invokes kbu-sub-literature-review via Agent tool (literature in its own context), Step 3 grills the full plan dependency tree then writes RESEARCH_PLAN.md, Step 4 populates manifest [[notebooks]] then renders TASKS.md as a flat task list. Satisfies AC #48 and #50; User Stories #1-#4, #16. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
cshenry
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Jul 6, 2026
…ssions Adds src/kbutillib/beril_worktree/ package with two modules: - config.py: resolve and persist beril_root / worktree_root with documented precedence (explicit > env > config > default) via kbu's own ~/.kbutillib/config.yaml; set_root helper expands ~ and creates the config file/dir if missing. Never writes BERIL's config. - manager.py: BerilWorktree(beril_root, worktree_root) with new/remove/ list/open interface. All git ops use `git -C <beril_root>`. Implements AC #4-#13 and AC #20-#21 from the PRD (ID validation, branch adoption, symlinks, workspace file, idempotent remove, dirty-check. Full pytest suite (69 tests) against a scratch temp git repo achieves 100% line + branch coverage, satisfying fail_under=100. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> EOF )
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Bumps actions/download-artifact from 4 to 5.
Release notes
Sourced from actions/download-artifact's releases.
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Commits
634f93cMerge pull request #416 from actions/single-artifact-id-download-pathb19ff43refactor: resolve download path correctly in artifact download tests (mainly ...e262cbebundle distbff23f9update docsfff8c14fix download path logic when downloading a single artifact by id448e3f8Merge pull request #407 from actions/nebuk89-patch-147225c4Update README.mdDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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