Skip to content

Navigation Menu

Appearance settings

vaioic

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Van Andel Institute Optical Imaging Core

Supporting the Van Andel Institute’s mission through innovative microscopy analysis.

1 follower
Grand Rapids, MI
https://opticalimagingcore.vai.org/
opticalimaging@vai.org

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Popular repositories Loading

QuPath_Workshop2025 QuPath_Workshop2025 Public

This repository contains code, tutorials, and image links for the QuPath Workshop held on June 17, 2025

Python 2
Steensma-Lab Steensma-Lab Public

Groovy
Published_Scripts Published_Scripts Public

ImageJ Macro
OIC-136_Microglia OIC-136_Microglia Public

Analysis of microglia activation states in zebrafish

Jupyter Notebook
OIC-114_NeuronTracing OIC-114_NeuronTracing Public
OIC-137_Colony_Forming_Analysis OIC-137_Colony_Forming_Analysis Public

Jupyter Notebook

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All Groovy ImageJ Macro Jupyter Notebook Python

Sort

Select order

Last updated Name Stars

Showing 10 of 45 repositories

OIC-293 Public
Quantifying areas in large tissue. Yujin Leong and Jared Fallon (Lien Lab)

vaioic/OIC-293’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated May 22, 2026
brightfield-organoid-analyzer Public Forked from vaioic/OIC-234
Toolbox to analyze data from brightfield images of organoids. Primary collaborator: Junwei Niu (Wen Lab)

vaioic/brightfield-organoid-analyzer’s past year of commit activity

Python 0 GPL-3.0 1 0 0 Updated May 13, 2026
OIC-295 Public Forked from vaioic/OIC-244
Merging swiss roll images (Josef Gullmets)

vaioic/OIC-295’s past year of commit activity

Python 0 GPL-3.0 1 0 0 Updated May 12, 2026
OIC-216 Public
TEM Image Analysis - Alexis Bergsma (Moore lab)

vaioic/OIC-216’s past year of commit activity

Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 5, 2026
OIC-289 Public
Analyzing brightfield golgi-stained neurons. Junwei Niu (Wen Lab)

vaioic/OIC-289’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Apr 29, 2026
OIC-262 Public
Colorimetric analysis of C. elegans (Burton Lab)

vaioic/OIC-262’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Apr 27, 2026
OIC-300-Test Public
Test repo

vaioic/OIC-300-Test’s past year of commit activity

0 0 0 0 Updated Apr 27, 2026
OIC-274 Public
Quantifying DNA damage in cells with Rahma Ben Hassoun (Rothbart lab)

vaioic/OIC-274’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Apr 16, 2026
VAI_DL_Models Public
Custom made models for VAI specific datasets

vaioic/VAI_DL_Models’s past year of commit activity

0 GPL-3.0 0 0 0 Updated Apr 15, 2026
Genomics_Cell_Analysis Public

vaioic/Genomics_Cell_Analysis’s past year of commit activity

Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 15, 2026

View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.