This project depends on https://github.com/ncbnaturalis/bio-phylo and 
https://github.com/bioperl/bioperl-live in addition to the other command 
line tools specified in the Makefile.

To get a better understanding of how everything is organized, have a look at:
http://dx.doi.org/10.1371/journal.pcbi.1000424