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feat: Cc4kv0.5 1.22.26#131

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mkirk111 wants to merge 14 commits intomainfrom
cc4kv0.5-1.22.25
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feat: Cc4kv0.5 1.22.26#131
mkirk111 wants to merge 14 commits intomainfrom
cc4kv0.5-1.22.25

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Update university docs with the following:

  • Add diagnosis category (abt out data) metadata
  • Remove reference to germ cell
  • CC4K whitepaper revisions

@mkirk111 mkirk111 added the blocked This task is blocked pending action elsewhere label Jan 23, 2026
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Blocked; should not be merged until CC4K v0.5 is ready for production.

@mkirk111 mkirk111 self-assigned this Jan 23, 2026
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/preview

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/preview

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/destroy

@mkirk111 mkirk111 removed the blocked This task is blocked pending action elsewhere label Mar 12, 2026
@mkirk111 mkirk111 changed the title feat: Cc4kv0.5 1.22.25 feat: Cc4kv0.5 1.22.26 Mar 12, 2026
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/preview

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Pull request overview

Updates St. Jude Cloud documentation and downloadable artifacts for the CC4K v0.5 release, and adds a new metadata field description for “About our data”.

Changes:

  • Add CC4K v0.5 documentation section and publish the v0.5 Excel download.
  • Add ped_cancer_diagnosis_category to the metadata field table and revise attr_diagnosis_group wording.
  • Add a Flux HelmRelease manifest for the PR131 preview environment.

Reviewed changes

Copilot reviewed 3 out of 4 changed files in this pull request and generated 3 comments.

File Description
public/files/cc4k/Official_CC4K_v0.5.xlsx Adds the CC4K v0.5 downloadable spreadsheet artifact.
deployment/preview/pr131/app.yaml Adds PR-specific preview HelmRelease configuration (docs-pr131).
content/3.genomics-platform/2.about-our-data/3.metadata-and-clinical-information.md Documents new diagnosis-category metadata and revises diagnosis-group description.
content/2.cc4k/1.index.md Adds CC4K v0.5 release notes and download link.

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/preview

@mkirk111 mkirk111 requested a review from claymcleod March 12, 2026 17:41
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/destroy

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A few things to address:


Submitted: March 11, 2026

Click [here](/files/cc4k/Official_CC4K_v0.5.xlsx) {target="_blank"} to download.
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There's a space before {target="_blank"} here that the other versions don't have — I think this will cause it to render as literal text rather than being applied to the link.

Suggested change
Click [here](/files/cc4k/Official_CC4K_v0.5.xlsx) {target="_blank"} to download.
Click [here](/files/cc4k/Official_CC4K_v0.5.xlsx){target="_blank"} to download.

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Updated

mkirk111 and others added 2 commits March 12, 2026 16:03
Co-authored-by: Clay McLeod <3411613+claymcleod@users.noreply.github.com>
@mkirk111 mkirk111 requested a review from claymcleod March 12, 2026 21:45
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All feedback addressed — looks good!

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4 participants