Integrate uniprot#78

Merged

adamjohnwright merged 23 commits intomainfrom

integrate-uniprot

Mar 20, 2025

Commits on Feb 11, 2025

Commits on Feb 12, 2025

Commits on Feb 24, 2025

renamed create_retrieval_chain to create_retriever and modified it to return only the retriever
heliamoh
committed
added qa_prompt to create_rag_chain to to support integration of multiple database LLMs
heliamoh
committed
added qa_prompt to create_rag_chain to to support integration of multiple database LLMs
heliamoh
committed
added qa_prompt to create_rag_chain to to support integration of multiple database LLMs
heliamoh
committed
reorganized Reactome and pre/post-processing prompts. Added UniProt prompts
heliamoh
committed
updated variable name 'question' to 'input' for consistency
heliamoh
committed
integrate chainlit with the new 'cross-database' system
heliamoh
committed
the new graph system for uniprot integration
heliamoh
committed

Commits on Feb 27, 2025

Commits on Mar 3, 2025

Merge branch 'refactor-codebase' into integrate-uniprot
GFJHogue
committed

Commits on Mar 11, 2025

improved typing & integrate cross-db code [WIP]
GFJHogue
committed

Commits on Mar 12, 2025

ensure unchanged React-to-Me behaviour; fix state/checkpointer setup
GFJHogue
committed

Commits on Mar 19, 2025

Merge branch 'main' into integrate-uniprot
GFJHogue
committed