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@ratschlab

Biomedical Informatics at ETH Zurich

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  1. RGAN RGAN Public

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 656 179

  2. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 225 26

  3. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 198 33

  4. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 143 31

  5. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 111 35

  6. circEWS circEWS Public

    circEWS public code

    Python 77 27

Repositories

Showing 10 of 140 repositories
  • Megatron-LM Public Forked from swiss-ai/Megatron-LM

    Ongoing research training transformer models at scale

    ratschlab/Megatron-LM’s past year of commit activity
    Python 0 3,838 0 0 Updated Mar 27, 2026
  • collinearity Public
    ratschlab/collinearity’s past year of commit activity
    C++ 0 0 0 0 Updated Mar 25, 2026
  • ratschlab/MinknoApiSimulator’s past year of commit activity
    Python 0 0 0 0 Updated Mar 24, 2026
  • metagraphRF Public
    ratschlab/metagraphRF’s past year of commit activity
    Python 0 0 0 0 Updated Mar 24, 2026
  • metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    ratschlab/metagraph’s past year of commit activity
    C++ 225 GPL-3.0 26 0 18 Updated Mar 24, 2026
  • NASExperiments Public Forked from sayangoswami/NASExperiments

    Selective Sequencing Experiments

    ratschlab/NASExperiments’s past year of commit activity
    Python 0 1 0 0 Updated Mar 23, 2026
  • DeepSpot2Cell Public

    DeepSpot2Cell: Predicting virtual single-cell spatial transcriptomics from H&E images using spot-level supervision

    ratschlab/DeepSpot2Cell’s past year of commit activity
    Jupyter Notebook 9 MIT 2 5 0 Updated Mar 23, 2026
  • WiNN-for-technical-correction Public

    Repository accompanying the WiNN paper, containing reproducible analysis notebooks for the simulation benchmark and public multi-batch dataset, together with code to reproduce benchmarking results, supplementary analyses, and figure/table generation for the manuscript.

    ratschlab/WiNN-for-technical-correction’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 19, 2026
  • DeepSpot Public

    DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.

    ratschlab/DeepSpot’s past year of commit activity
    Jupyter Notebook 66 MIT 18 1 2 Updated Mar 16, 2026
  • winn Public

    R package for metabolomics data correction using a multi-step pipeline

    ratschlab/winn’s past year of commit activity
    HTML 0 1 0 0 Updated Mar 12, 2026