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@maize-genetics

Maize Genetics

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  1. tassel tassel Public

    Trait Analysis by aSSociation, Evolution and Linkage

    Java 1 1

  2. phg_v2 phg_v2 Public

    Practical Haplotype Graph (PHG) version 2

    Kotlin 31 4

  3. BioKotlin BioKotlin Public

    High performance bioinformatics library for Kotlin

    Kotlin 9 1

  4. biokotlin-tools biokotlin-tools Public

    Command line tools related to BioKotlin

    Kotlin 2

  5. rTASSEL rTASSEL Public

    R front-end for TASSEL 5

    R 33 9

  6. rPHG2 rPHG2 Public

    R interface to PHGv2

    R 3

Repositories

Showing 10 of 33 repositories
  • phg_v2 Public

    Practical Haplotype Graph (PHG) version 2

    maize-genetics/phg_v2’s past year of commit activity
    Kotlin 31 Apache-2.0 4 10 4 Updated May 27, 2026
  • seq_sim Public

    DNA sequence simulation pipeline

    maize-genetics/seq_sim’s past year of commit activity
    Kotlin 2 1 0 0 Updated May 26, 2026
  • rTASSEL Public

    R front-end for TASSEL 5

    maize-genetics/rTASSEL’s past year of commit activity
    R 33 Apache-2.0 9 7 0 Updated May 15, 2026
  • grits Public

    Simple tool to run Machine Learning based imputation techniques

    maize-genetics/grits’s past year of commit activity
    Python 2 Apache-2.0 0 20 1 Updated May 15, 2026
  • atlas-of-grass-senescence-dashboard Public

    Interactive dashboard to explore the expression data from the study: A transcriptomic atlas of grass senescence reveals divergent underground sink networks limit nitrogen recycling in annuals

    maize-genetics/atlas-of-grass-senescence-dashboard’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated May 9, 2026
  • breeder-genomics-hub Public

    The Breeder Genomics Hub is a batteries-included JupyterHub distribution for breeders (Pangeo for plant scientists)

    maize-genetics/breeder-genomics-hub’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 9, 2026
  • cassava-coordinate-converter Public

    Web app for converting genomic coordinates between cassava reference genomes

    maize-genetics/cassava-coordinate-converter’s past year of commit activity
    Python 0 0 0 0 Updated Apr 3, 2026
  • rtassel_docker Public

    Docker image for rTASSEL

    maize-genetics/rtassel_docker’s past year of commit activity
    0 0 0 0 Updated Mar 24, 2026
  • cassava_datalake_hack Public

    Rough hackathon-style scripts and figures to understand the cassava data lake via the project yaml page. Idea is to be able to create an AI agent to query the data lake.

    maize-genetics/cassava_datalake_hack’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 20, 2026
  • poaceae_tfbs Public

    Evolution of cis-regulatory motifs across 589 grass species

    maize-genetics/poaceae_tfbs’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 15, 2025
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