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chore(deps): lock file maintenance#116

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chore(deps): lock file maintenance#116
renovate[bot] wants to merge 1 commit intomainfrom
renovate/lock-file-maintenance

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@renovate renovate bot commented Mar 30, 2026

This PR contains the following updates:

Update Change
lockFileMaintenance All locks refreshed

🔧 This Pull Request updates lock files to use the latest dependency versions.

Configuration

📅 Schedule: Branch creation - Between 12:00 AM and 03:59 AM, only on Monday ( * 0-3 * * 1 ) (UTC), Automerge - At any time (no schedule defined).

🚦 Automerge: Enabled.

♻ Rebasing: Whenever PR is behind base branch, or you tick the rebase/retry checkbox.

👻 Immortal: This PR will be recreated if closed unmerged. Get config help if that's undesired.

  • If you want to rebase/retry this PR, check this box

This PR was generated by Mend Renovate. View the repository job log.

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liblaf-mega-linter bot commented Mar 30, 2026

✅⚠️MegaLinter analysis: Success with warnings

Descriptor Linter Files Fixed Errors Warnings Elapsed time
⚠️ COPYPASTE jscpd yes 23 no 3.41s
⚠️ JSON prettier 29 0 1 0 0.63s
✅ JSON v8r 29 0 0 7.83s
✅ PYTHON ruff yes yes no no 0.45s
✅ REPOSITORY git_diff yes no no 0.36s
⚠️ SPELL cspell 222 1 0 7.11s
✅ YAML prettier 4 0 0 0 0.83s
✅ YAML v8r 4 0 0 6.81s
✅ YAML yamllint 4 0 0 0.44s

Detailed Issues

⚠️ SPELL / cspell - 1 error 
tmp.6NE8UxMvCk/renovate-config.json:28:4      - Unknown word (pyenv)      -- "pyenv": {
	 Suggestions: [peen, pena, pend, peng, penh]
CSpell: Files checked: 200, Issues found: 1 in 1 file.


You can skip this misspellings by defining the following .cspell.json file at the root of your repository
Of course, please correct real typos before :)

{
    "version": "0.2",
    "language": "en",
    "ignorePaths": [
        "**/node_modules/**",
        "**/vscode-extension/**",
        "**/.git/**",
        "**/.pnpm-lock.json",
        ".vscode",
        "package-lock.json",
        "megalinter-reports"
    ],
    "words": [
        "pyenv"
    ]
}


You can also copy-paste megalinter-reports/LINTER_DEFAULT at the root of your repository
⚠️ COPYPASTE / jscpd - 23 errors 
Clone found (python):
 - src/liblaf/melon/io/paraview/series/_shared.py [6:1 - 18:2] (12 lines, 104 tokens)
   src/liblaf/melon/io/paraview/series/_writer.py [20:1 - 32:2]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [31:5 - 36:6] (5 lines, 81 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [38:5 - 43:6]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [80:7 - 86:15] (6 lines, 82 tokens)
   exp/2025/04/30/human-head-anatomy/src/34-muscles.py [99:11 - 105:23]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/32-muscle-orientation.py [13:30 - 21:14] (8 lines, 77 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [14:17 - 22:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/21-skin-thickness.py [157:14 - 170:14] (13 lines, 190 tokens)
   exp/2025/04/30/human-head-anatomy/src/21-skin-thickness.py [130:14 - 143:14]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/20-muscle-fix.py [18:17 - 25:5] (7 lines, 76 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [14:17 - 22:8]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/15-find-jaw-pivot.py [1:1 - 12:17] (11 lines, 88 tokens)
   exp/2025/10/29/fiber-direction/src/10-holes.py [1:1 - 12:17]

Clone found (python):
 - exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py [18:7 - 43:2] (25 lines, 224 tokens)
   exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [19:5 - 44:2]

Clone found (python):
 - src/liblaf/melon/tri/_wrapping.py [23:5 - 30:5] (7 lines, 96 tokens)
   src/liblaf/melon/ext/wrap/_fast_wrapping.py [20:5 - 27:17]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_point.py [61:1 - 74:2] (13 lines, 142 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [36:1 - 49:2]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [18:36 - 27:7] (9 lines, 108 tokens)
   src/liblaf/melon/transfer/_tri_point.py [20:19 - 29:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [28:2 - 37:7] (9 lines, 136 tokens)
   src/liblaf/melon/transfer/_tri_point.py [29:7 - 38:7]

Clone found (python):
 - src/liblaf/melon/transfer/_tri_cell_to_point_category.py [56:10 - 65:2] (9 lines, 85 tokens)
   src/liblaf/melon/transfer/_tri_point_to_tet.py [40:11 - 49:2]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [73:2 - 81:55] (8 lines, 168 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [48:7 - 55:33]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [90:13 - 102:7] (12 lines, 87 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [57:7 - 68:4]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [177:17 - 189:12] (12 lines, 146 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [146:19 - 158:8]

Clone found (python):
 - src/liblaf/melon/proximity/_nearest_point_on_surface.py [195:17 - 205:5] (10 lines, 140 tokens)
   src/liblaf/melon/proximity/_nearest_point_on_surface.py [157:7 - 169:4]

Clone found (python):
 - src/liblaf/melon/_src/graph.py [12:14 - 32:7] (20 lines, 340 tokens)
   src/liblaf/melon/tet/_laplacian.py [15:5 - 35:24]

Clone found (bash):
 - .config/copier/mise-tasks/install.sh [4:1 - 22:8] (18 lines, 152 tokens)
   .config/copier/mise-tasks/upgrade.sh [5:1 - 23:8]

Clone found (python):
 - scripts/bench-contains.py [54:5 - 63:2] (9 lines, 129 tokens)
   scripts/bench-on-surface.py [96:5 - 105:2]

Clone found (python):
 - scripts/bench-contains.py [63:2 - 74:5] (11 lines, 161 tokens)
   scripts/bench-on-surface.py [105:2 - 116:17]

Clone found (python):
 - scripts/bench-cell-neighbors.py [29:2 - 40:9] (11 lines, 156 tokens)
   tests/_src/graph/test_cell_neighbors.py [8:23 - 20:4]

Clone found (python):
 - scripts/bench-cell-neighbors.py [56:7 - 65:8] (9 lines, 136 tokens)
   src/liblaf/melon/tet/_laplacian.py [28:7 - 35:11]

┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 153            │ 5329        │ 54555        │ 22           │ 236 (4.43%)      │ 2952 (5.41%)      │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 6              │ 147         │ 999          │ 1            │ 18 (12.24%)      │ 152 (15.22%)      │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 159            │ 5476        │ 55554        │ 23           │ 254 (4.64%)      │ 3104 (5.59%)      │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 23 clones.
HTML report saved to megalinter-reports/copy-paste/html/
ERROR: jscpd found too many duplicates (4.64%) over threshold (0%)
Error: ERROR: jscpd found too many duplicates (4.64%) over threshold (0%)
    at ThresholdReporter.report (/node-deps/node_modules/@jscpd/finder/dist/index.js:612:13)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:110:18
    at Array.forEach (<anonymous>)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:109:22
    at async /node-deps/node_modules/jscpd/dist/jscpd.js:351:5
⚠️ JSON / prettier - 1 error 
.config/linters/pyrightconfig.json 57ms (unchanged)
.config/release-please/config.json 21ms (unchanged)
.github/renovate.json 3ms (unchanged)
.vscode/settings.json 9ms (unchanged)
[error] exp/2025/04/30/human-head-anatomy/data/00-XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/00-sculptor-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error]   3 | size 429
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/00-sculptor-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error]   3 | size 476
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error]   3 | size 429
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/face.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:e458b1bb67aa33ac9db931cb0d6d6d685429cfb7d46417c1b333af46924ad85f
[error]   3 | size 800
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error]   3 | size 476
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/skull.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:4df392ea2d66a5057ceefc7b5191760f6791e48bcfda3b55a3138f91f26989ff
[error]   3 | size 1215
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin-with-mouth-socket.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:5846defd42970713d2bcdd08b798fd2653346de4662129e1fffbe4521b41f1ad
[error]   3 | size 715
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:8a9430700a2b0e825304625d59107487f31f39c67421260dd9949f57b267ad3f
[error]   3 | size 804
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:e936620a71ec8780c4d65bea3697c6f9c90acb4dc0dbe3c4fda50a45b5cab147
[error]   3 | size 870
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error]   3 | size 719
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error]   3 | size 430
[error]   4 |
[error] exp/2025/04/30/human-head-anatomy/data/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error]     |         ^
[error]   2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error]   3 | size 474
[error]   4 |
pyrightconfig.json 1ms (unchanged)
tmp.6NE8UxMvCk/linters/pyrightconfig.json 2ms (unchanged)
tmp.6NE8UxMvCk/renovate-config.json 3ms (unchanged)

See detailed reports in MegaLinter artifacts

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codecov bot commented Mar 30, 2026 •
edited
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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 63.55%. Comparing base (0477b0d) to head (51ccf21).
✅ All tests successful. No failed tests found.

Additional details and impacted files 
@@           Coverage Diff           @@
##             main     #116   +/-   ##
=======================================
  Coverage   63.55%   63.55%           
=======================================
  Files         111      111           
  Lines        1726     1726           
  Branches      105      105           
=======================================
  Hits         1097     1097           
  Misses        611      611           
  Partials       18       18

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@renovate renovate bot force-pushed the renovate/lock-file-maintenance branch from 892acfe to 51ccf21 Compare March 30, 2026 04:59
@renovate renovate bot requested a review from liblaf March 30, 2026 09:07
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@renovate-approve renovate-approve[bot] renovate-approve[bot] approved these changes

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