refactor(cli): consolidate internal command tree layout

[skevetter]

Summary

• Move cmd/agent/ and cmd/helper/ under cmd/internal/ so the source layout mirrors the hidden internal command tree.
• Hoist the agent container/workspace subcommands into agentcontainer/agentworkspace packages, and group the helper http/json/strings/ssh/provider/image/workspace-info commands into focused sub-packages before dissolving the loose files into the cmdinternal package.
• Remove the hidden helper parent command, promoting its 16 subcommands to direct children of internal (e.g. internal helper ssh-server -> internal ssh-server), and update all Go, provider.yaml, desktop, and docs call sites.
• Attach the agentPreRunE hook per-command so daemon-local/logs-daemon/run-user-commands keep inheriting the root command's PersistentPreRunE; preserve git-ssh-signature-helper as a genuine distinct command.

[netlify]

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Run ID: 4d6ced76-2cbe-4b4d-b0e6-a6709e954f61

📥 Commits

Reviewing files that changed from the base of the PR and between f2f5e15 and 2b99adc.

📒 Files selected for processing (87)

• cmd/agent/agent.go
• cmd/agent/git_ssh_signature_helper.go
• cmd/helper/helper.go
• cmd/internal/agent.go
• cmd/internal/agent_daemon.go
• cmd/internal/agent_docker_credentials.go
• cmd/internal/agentcontainer/codeserver_async.go
• cmd/internal/agentcontainer/container.go
• cmd/internal/agentcontainer/credentials_server.go
• cmd/internal/agentcontainer/daemon.go
• cmd/internal/agentcontainer/deferred_hooks.go
• cmd/internal/agentcontainer/deferred_hooks_windows.go
• cmd/internal/agentcontainer/openvscode_async.go
• cmd/internal/agentcontainer/post_attach.go
• cmd/internal/agentcontainer/post_attach_windows.go
• cmd/internal/agentcontainer/setup.go
• cmd/internal/agentcontainer/setup_devsy_platform_access.go
• cmd/internal/agentcontainer/setup_internal_test.go
• cmd/internal/agentcontainer/setup_windows.go
• cmd/internal/agentcontainer/ssh_server.go
• cmd/internal/agentcontainer/vscode_async.go
• cmd/internal/agentworkspace/build.go
• cmd/internal/agentworkspace/clean.go
• cmd/internal/agentworkspace/clean_test.go
• cmd/internal/agentworkspace/delete.go
• cmd/internal/agentworkspace/delete_test.go
• cmd/internal/agentworkspace/docker_darwin_test.go
• cmd/internal/agentworkspace/install_dotfiles.go
• cmd/internal/agentworkspace/logs.go
• cmd/internal/agentworkspace/logs_daemon.go
• cmd/internal/agentworkspace/setup_gpg.go
• cmd/internal/agentworkspace/status.go
• cmd/internal/agentworkspace/stop.go
• cmd/internal/agentworkspace/up.go
• cmd/internal/agentworkspace/update_config.go
• cmd/internal/agentworkspace/workspace.go
• cmd/internal/browser_tunnel.go
• cmd/internal/browser_tunnel_test.go
• cmd/internal/check_provider_update.go
• cmd/internal/container_tunnel.go
• cmd/internal/fleet_server.go
• cmd/internal/get.go
• cmd/internal/get_image.go
• cmd/internal/get_image_platforms.go
• cmd/internal/get_provider_name.go
• cmd/internal/get_workspace_config.go
• cmd/internal/get_workspace_name.go
• cmd/internal/get_workspace_uid.go
• cmd/internal/git_credentials.go
• cmd/internal/git_ssh_signature.go
• cmd/internal/git_ssh_signature_test.go
• cmd/internal/http.go
• cmd/internal/internal.go
• cmd/internal/json.go
• cmd/internal/request.go
• cmd/internal/setup_docker_credentials.go
• cmd/internal/sh.go
• cmd/internal/ssh_client.go
• cmd/internal/ssh_git_clone.go
• cmd/internal/ssh_server.go
• cmd/internal/strings.go
• cmd/machine/ssh.go
• cmd/pro/check_update.go
• cmd/pro/daemon/netcheck.go
• cmd/pro/daemon/status.go
• cmd/pro/health.go
• cmd/pro/provider/provider.go
• cmd/workspace/logs.go
• cmd/workspace/ssh.go
• cmd/workspace/up/agent.go
• desktop/src/main/ipc.ts
• docs/uml/up_sequence.puml
• e2e/tests/machineprovider/testdata/machineprovider/provider.yaml
• e2e/tests/machineprovider/testdata/machineprovider2/provider.yaml
• e2e/tests/machineprovider/testdata/machineprovider3/provider.yaml
• e2e/tests/tunnel/testdata/tunnel/provider.yaml
• pkg/agent/agent.go
• pkg/agent/workspace.go
• pkg/devcontainer/setup.go
• pkg/ide/fleet/fleet.go
• pkg/ide/opener/browser_tunnel.go
• pkg/ide/opener/browser_tunnel_test.go
• pkg/shell/shell.go
• pkg/tunnel/container.go
• providers/docker/provider.yaml
• providers/kubernetes/provider.yaml
• providers/podman/provider.yaml

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