Update leaf segmentation container and inference notebook#35
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pradyumnae wants to merge 5 commits into
Open
Update leaf segmentation container and inference notebook#35pradyumnae wants to merge 5 commits into
pradyumnae wants to merge 5 commits into
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- Moved existing Dockerfile/docker-compose.yml/vtk_trial.ipynb into general_model/ - Added new leaf_segmentation/ container with: - Dockerfile: Ubuntu + Miniforge + PyTorch (CUDA 12.4) + segmentation-models-pytorch, albumentations, wandb - docker-compose.yml: JupyterLab on port 8001 - Notebook: 12225_UPDATE_TRAINING_fullbigleaf_optionsunetplusplus_batch2.ipynb
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This PR creates a new Jupyter notebook for running leaf segmentation inference, sets up a modern Docker container based on PyTorch, and resolves GitHub Actions permissions for publishing images. It also cleans up untracked data files and fixes repository issues.