Hey y'all, I'm running into issues trying to use the smart_open integration. I'm hoping you can help provide some guidance.
I ran the optional python -m pip install -e ".[optimized-streaming]" and confirmed that smart_open was installed. I'm testing with Amazon S3. I'm logged into S3 and can confirm that I see the buckets using aws s3 ls --profile. I don't see any example commands in the docs for how to run csvtofhir convert using an S3 bucket. Here's an example of the commands I've tried.
csvtofhir convert -d s3://{my-test-bucket}/ -o s3://{my-test-bucket}/output/
csvtofhir convert -d https://{my-test-bucket}.s3.us-east-1.amazonaws.com -o https://{my-test-bucket}.s3.us-east-1.amazonaws.com/output/
Any help would be greatly appreciated. This is awesome tool and I'm planning to contribute mappings for a few more resources like Coverage and EOB.
Hey y'all, I'm running into issues trying to use the smart_open integration. I'm hoping you can help provide some guidance.
I ran the optional
python -m pip install -e ".[optimized-streaming]"and confirmed that smart_open was installed. I'm testing with Amazon S3. I'm logged into S3 and can confirm that I see the buckets usingaws s3 ls --profile. I don't see any example commands in the docs for how to runcsvtofhir convertusing an S3 bucket. Here's an example of the commands I've tried.csvtofhir convert -d s3://{my-test-bucket}/ -o s3://{my-test-bucket}/output/csvtofhir convert -d https://{my-test-bucket}.s3.us-east-1.amazonaws.com -o https://{my-test-bucket}.s3.us-east-1.amazonaws.com/output/Any help would be greatly appreciated. This is awesome tool and I'm planning to contribute mappings for a few more resources like Coverage and EOB.