Benaroya Research Institute

Distribution analysis across clusters of a parent population overlaid with a rare subpopulation (DISCOV-R)

P589-1, a 10X GEM-X XLEAP investigation of CD4 Tcells in T1D and HC subjects with a CITEseq panel

This repository houses code used to analyze and generate figures from all data presented in Bottorff et al., 2026.

Code for the study entitled "Self-reactive human conventional and regulatory T cells are clonally expanded but have distinct TCR repertoires" by Thomas

Miscellaneous helper functions for common tasks. A hodgepodge of stuff that doesn't fit into other packages.

Code repository for read team's data challenge

This pipeline was used for the HIPC cell-annotation challenge and run over the infection 6and vaccination 7 study cohorts.

Virginia Mason Gut-Brain Coaching Class. Investigator: Molly Anderson, DO, PI: Justin Brandler, MD.