diff --git a/.chainlit/config.toml b/.chainlit/config.toml index e2c7032..bb57df8 100644 --- a/.chainlit/config.toml +++ b/.chainlit/config.toml @@ -34,6 +34,15 @@ edit_message = true # Authorize users to spontaneously upload files with messages [features.spontaneous_file_upload] enabled = false + # Define accepted file types using MIME types + # Examples: + # 1. For specific file types: + # accept = ["image/jpeg", "image/png", "application/pdf"] + # 2. For all files of certain type: + # accept = ["image/*", "audio/*", "video/*"] + # 3. For specific file extensions: + # accept = { "application/octet-stream" = [".xyz", ".pdb"] } + # Note: Using "*/*" is not recommended as it may cause browser warnings accept = ["*/*"] max_files = 20 max_size_mb = 500 @@ -76,4 +85,4 @@ github = "https://github.com/reactome/reactome_chatbot/issues" # custom_build = "./public/build" [meta] -generated_by = "2.0.3" +generated_by = "2.0.602" diff --git a/.chainlit/translations/en-US.json b/.chainlit/translations/en-US.json index 0bca720..21cb885 100644 --- a/.chainlit/translations/en-US.json +++ b/.chainlit/translations/en-US.json @@ -1,231 +1,191 @@ { - "components": { - "atoms": { - "buttons": { - "userButton": { - "menu": { - "settings": "Settings", - "settingsKey": "S", - "APIKeys": "API Keys", - "logout": "Logout" - } + "common": { + "actions": { + "cancel": "Cancel", + "confirm": "Confirm", + "continue": "Continue", + "goBack": "Go Back", + "reset": "Reset", + "submit": "Submit" + }, + "status": { + "loading": "Loading...", + "error": { + "default": "An error occurred", + "serverConnection": "Could not reach the server" + } + } + }, + "auth": { + "login": { + "title": "Login to access the app", + "form": { + "email": { + "label": "Email address", + "required": "email is a required field" + }, + "password": { + "label": "Password", + "required": "password is a required field" + }, + "actions": { + "signin": "Sign In" + }, + "alternativeText": { + "or": "OR" } + }, + "errors": { + "default": "Unable to sign in", + "signin": "Try signing in with a different account", + "oauthSignin": "Try signing in with a different account", + "redirectUriMismatch": "The redirect URI is not matching the oauth app configuration", + "oauthCallback": "Try signing in with a different account", + "oauthCreateAccount": "Try signing in with a different account", + "emailCreateAccount": "Try signing in with a different account", + "callback": "Try signing in with a different account", + "oauthAccountNotLinked": "To confirm your identity, sign in with the same account you used originally", + "emailSignin": "The e-mail could not be sent", + "emailVerify": "Please verify your email, a new email has been sent", + "credentialsSignin": "Sign in failed. Check the details you provided are correct", + "sessionRequired": "Please sign in to access this page" + } + }, + "provider": { + "continue": "Continue with {{provider}}" + } + }, + "chat": { + "input": { + "placeholder": "Type your message here...", + "actions": { + "send": "Send message", + "stop": "Stop Task", + "attachFiles": "Attach files" + } + }, + "speech": { + "start": "Start recording", + "stop": "Stop recording", + "connecting": "Connecting" + }, + "fileUpload": { + "dragDrop": "Drag and drop files here", + "browse": "Browse Files", + "sizeLimit": "Limit:", + "errors": { + "failed": "Failed to upload", + "cancelled": "Cancelled upload of" } }, - "molecules": { - "newChatButton": { - "newChat": "New Chat" + "messages": { + "status": { + "using": "Using", + "used": "Used" }, - "tasklist": { - "TaskList": { - "title": "\ud83d\uddd2\ufe0f Task List", - "loading": "Loading...", - "error": "An error occured" + "actions": { + "copy": { + "button": "Copy to clipboard", + "success": "Copied!" } }, - "attachments": { - "cancelUpload": "Cancel upload", - "removeAttachment": "Remove attachment" - }, - "newChatDialog": { - "createNewChat": "Create new chat?", - "clearChat": "This will clear the current messages and start a new chat.", - "cancel": "Cancel", - "confirm": "Confirm" - }, - "settingsModal": { - "settings": "Settings", - "expandMessages": "Expand Messages", - "hideChainOfThought": "Hide Chain of Thought", - "darkMode": "Dark Mode" - }, - "detailsButton": { - "using": "Using", - "running": "Running", - "took_one": "Took {{count}} step", - "took_other": "Took {{count}} steps" - }, - "auth": { - "authLogin": { - "title": "Login to access the app.", - "form": { - "email": "Email address", - "password": "Password", - "noAccount": "Don't have an account?", - "alreadyHaveAccount": "Already have an account?", - "signup": "Sign Up", - "signin": "Sign In", - "or": "OR", - "continue": "Continue", - "forgotPassword": "Forgot password?", - "passwordMustContain": "Your password must contain:", - "emailRequired": "email is a required field", - "passwordRequired": "password is a required field" - }, - "error": { - "default": "Unable to sign in.", - "signin": "Try signing in with a different account.", - "oauthsignin": "Try signing in with a different account.", - "redirect_uri_mismatch": "The redirect URI is not matching the oauth app configuration.", - "oauthcallbackerror": "Try signing in with a different account.", - "oauthcreateaccount": "Try signing in with a different account.", - "emailcreateaccount": "Try signing in with a different account.", - "callback": "Try signing in with a different account.", - "oauthaccountnotlinked": "To confirm your identity, sign in with the same account you used originally.", - "emailsignin": "The e-mail could not be sent.", - "emailverify": "Please verify your email, a new email has been sent.", - "credentialssignin": "Sign in failed. Check the details you provided are correct.", - "sessionrequired": "Please sign in to access this page." - } - }, - "authVerifyEmail": { - "almostThere": "You're almost there! We've sent an email to ", - "verifyEmailLink": "Please click on the link in that email to complete your signup.", - "didNotReceive": "Can't find the email?", - "resendEmail": "Resend email", - "goBack": "Go Back", - "emailSent": "Email sent successfully.", - "verifyEmail": "Verify your email address" - }, - "providerButton": { - "continue": "Continue with {{provider}}", - "signup": "Sign up with {{provider}}" + "feedback": { + "positive": "Helpful", + "negative": "Not helpful", + "edit": "Edit feedback", + "dialog": { + "title": "Add a comment", + "submit": "Submit feedback" }, - "authResetPassword": { - "newPasswordRequired": "New password is a required field", - "passwordsMustMatch": "Passwords must match", - "confirmPasswordRequired": "Confirm password is a required field", - "newPassword": "New password", - "confirmPassword": "Confirm password", - "resetPassword": "Reset Password" - }, - "authForgotPassword": { - "email": "Email address", - "emailRequired": "email is a required field", - "emailSent": "Please check the email address {{email}} for instructions to reset your password.", - "enterEmail": "Enter your email address and we will send you instructions to reset your password.", - "resendEmail": "Resend email", - "continue": "Continue", - "goBack": "Go Back" + "status": { + "updating": "Updating", + "updated": "Feedback updated" } } }, - "organisms": { - "chat": { - "history": { - "index": { - "showHistory": "Show history", - "lastInputs": "Last Inputs", - "noInputs": "Such empty...", - "loading": "Loading..." - } - }, - "inputBox": { - "input": { - "placeholder": "Type your message here..." - }, - "speechButton": { - "start": "Start recording", - "stop": "Stop recording" - }, - "SubmitButton": { - "sendMessage": "Send message", - "stopTask": "Stop Task" - }, - "UploadButton": { - "attachFiles": "Attach files" - }, - "waterMark": { - "text": "Built with" - } - }, - "Messages": { - "index": { - "running": "Running", - "executedSuccessfully": "executed successfully", - "failed": "failed", - "feedbackUpdated": "Feedback updated", - "updating": "Updating" - } - }, - "dropScreen": { - "dropYourFilesHere": "Drop your files here" - }, - "index": { - "failedToUpload": "Failed to upload", - "cancelledUploadOf": "Cancelled upload of", - "couldNotReachServer": "Could not reach the server", - "continuingChat": "Continuing previous chat" - }, - "settings": { - "settingsPanel": "Settings panel", - "reset": "Reset", - "cancel": "Cancel", - "confirm": "Confirm" - } + "history": { + "title": "Last Inputs", + "empty": "Such empty...", + "show": "Show history" + }, + "settings": { + "title": "Settings panel" + }, + "watermark": "Built with" + }, + "threadHistory": { + "sidebar": { + "title": "Past Chats", + "filters": { + "search": "Search" + }, + "timeframes": { + "today": "Today", + "yesterday": "Yesterday", + "previous7days": "Previous 7 days", + "previous30days": "Previous 30 days" + }, + "empty": "No threads found", + "actions": { + "close": "Close sidebar", + "open": "Open sidebar" + } + }, + "thread": { + "untitled": "Untitled Conversation", + "menu": { + "rename": "Rename", + "delete": "Delete" }, - "threadHistory": { - "sidebar": { - "filters": { - "FeedbackSelect": { - "feedbackAll": "Feedback: All", - "feedbackPositive": "Feedback: Positive", - "feedbackNegative": "Feedback: Negative" - }, - "SearchBar": { - "search": "Search" + "actions": { + "delete": { + "title": "Confirm deletion", + "description": "This will delete the thread as well as its messages and elements. This action cannot be undone", + "success": "Chat deleted", + "inProgress": "Deleting chat" + }, + "rename": { + "title": "Rename Thread", + "description": "Enter a new name for this thread", + "form": { + "name": { + "label": "Name", + "placeholder": "Enter new name" } }, - "DeleteThreadButton": { - "confirmMessage": "This will delete the thread as well as it's messages and elements.", - "cancel": "Cancel", - "confirm": "Confirm", - "deletingChat": "Deleting chat", - "chatDeleted": "Chat deleted" - }, - "index": { - "pastChats": "Past Chats" - }, - "ThreadList": { - "empty": "Empty...", - "today": "Today", - "yesterday": "Yesterday", - "previous7days": "Previous 7 days", - "previous30days": "Previous 30 days" - }, - "TriggerButton": { - "closeSidebar": "Close sidebar", - "openSidebar": "Open sidebar" - } - }, - "Thread": { - "backToChat": "Go back to chat", - "chatCreatedOn": "This chat was created on" + "success": "Thread renamed!", + "inProgress": "Renaming thread" } - }, - "header": { - "chat": "Chat", - "readme": "Readme" } } }, - "hooks": { - "useLLMProviders": { - "failedToFetchProviders": "Failed to fetch providers:" - } - }, - "pages": { - "Design": {}, - "Env": { - "savedSuccessfully": "Saved successfully", - "requiredApiKeys": "Required API Keys", - "requiredApiKeysInfo": "To use this app, the following API keys are required. The keys are stored on your device's local storage." + "navigation": { + "header": { + "chat": "Chat", + "readme": "Readme" }, - "Page": { - "notPartOfProject": "You are not part of this project." + "newChat": { + "button": "New Chat", + "dialog": { + "title": "Create New Chat", + "description": "This will clear your current chat history. Are you sure you want to continue?", + "tooltip": "New Chat" + } }, - "ResumeButton": { - "resumeChat": "Resume Chat" + "user": { + "menu": { + "settings": "Settings", + "settingsKey": "S", + "apiKeys": "API Keys", + "logout": "Logout" + } + } + }, + "apiKeys": { + "title": "Required API Keys", + "description": "To use this app, the following API keys are required. The keys are stored on your device's local storage.", + "success": { + "saved": "Saved successfully" } } } \ No newline at end of file diff --git a/bin/chat-chainlit.py b/bin/chat-chainlit.py index f57e0e5..a28d96c 100644 --- a/bin/chat-chainlit.py +++ b/bin/chat-chainlit.py @@ -4,23 +4,21 @@ from typing import Any import chainlit as cl -import chainlit.data as cl_data +from chainlit.data.base import BaseDataLayer from chainlit.data.sql_alchemy import SQLAlchemyDataLayer from chainlit.types import ThreadDict from dotenv import load_dotenv +from langchain_community.callbacks import OpenAICallbackHandler from conversational_chain.graph import RAGGraphWithMemory from retreival_chain import create_retrieval_chain -from util.chainlit_helpers import is_feature_enabled # save_openai_metrics, -from util.chainlit_helpers import (message_rate_limited, static_messages, +from util.chainlit_helpers import (is_feature_enabled, message_rate_limited, + save_openai_metrics, static_messages, update_search_results) from util.config_yml import Config, TriggerEvent from util.embedding_environment import EmbeddingEnvironment from util.logging import logging -# from langchain_community.callbacks import OpenAICallbackHandler - - load_dotenv() config: Config | None = Config.from_yaml() @@ -30,14 +28,16 @@ llm_graph: RAGGraphWithMemory = create_retrieval_chain( ENV, EmbeddingEnvironment.get_dir(ENV), - False, - False, hf_model=EmbeddingEnvironment.get_model(ENV), ) if os.getenv("POSTGRES_CHAINLIT_DB"): CHAINLIT_DB_URI = f"postgresql+psycopg://{os.getenv('POSTGRES_USER')}:{os.getenv('POSTGRES_PASSWORD')}@postgres:5432/{os.getenv('POSTGRES_CHAINLIT_DB')}?sslmode=disable" - cl_data._data_layer = SQLAlchemyDataLayer(conninfo=CHAINLIT_DB_URI) + + @cl.data_layer + def get_data_layer() -> BaseDataLayer: + return SQLAlchemyDataLayer(conninfo=CHAINLIT_DB_URI) + else: logging.warning("POSTGRES_CHAINLIT_DB undefined; Chainlit persistence disabled.") @@ -96,12 +96,12 @@ async def main(message: cl.Message) -> None: stream_final_answer=True, force_stream_final_answer=True, # we're not using prefix tokens ) - # openai_cb = OpenAICallbackHandler() + openai_cb = OpenAICallbackHandler() enable_postprocess: bool = is_feature_enabled(config, "postprocessing") result: dict[str, Any] = await llm_graph.ainvoke( message.content, - callbacks=[chainlit_cb], + callbacks=[chainlit_cb, openai_cb], thread_id=thread_id, enable_postprocess=enable_postprocess, ) @@ -118,4 +118,4 @@ async def main(message: cl.Message) -> None: await static_messages(config, after_messages=message_count) - # save_openai_metrics(message.id, openai_cb) + save_openai_metrics(message.id, openai_cb) diff --git a/bin/export_records.py b/bin/export_records.py index 22074d9..fa091ec 100644 --- a/bin/export_records.py +++ b/bin/export_records.py @@ -22,7 +22,8 @@ def build_query(since_timestamp: str | None) -> str: steps.type, steps.output, feedbacks.value, - feedbacks.comment + feedbacks.comment, + threads.metadata->'openai_metrics'->steps.id::text AS openai_metrics FROM steps LEFT JOIN feedbacks ON steps."parentId" = feedbacks."forId" @@ -39,7 +40,6 @@ def build_query(since_timestamp: str | None) -> str: ), steps."createdAt"; """ - # TODO: add to SELECT , threads.metadata->'openai_metrics'->steps.id::text AS openai_metrics return query diff --git a/config_default.yml b/config_default.yml index 2c4e74b..88a9c41 100644 --- a/config_default.yml +++ b/config_default.yml @@ -20,6 +20,12 @@ messages: trigger: event: on_chat_start + survey_message: + message: |- + We hope you're enjoying your experience with React-to-me! We'd love to hear your feedback to make it even better. Please take a few minutes to fill out our [survey](https://forms.gle/Rvzb8EA73yZs7wd38). + trigger: + after_messages: 3 + demo-message: message: |- Hello! diff --git a/docker-compose.yml b/docker-compose.yml index cc1ba72..5dbe638 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -41,6 +41,7 @@ services: - CLOUDFLARE_SECRET_KEY=${CLOUDFLARE_SECRET_KEY} - CLOUDFLARE_SITE_KEY=${CLOUDFLARE_SITE_KEY} - CHAINLIT_URI=${CHAINLIT_URI_NO_LOGIN} + - CHAINLIT_URI_LOGIN=${CHAINLIT_URI} - CHAINLIT_URL=${CHAINLIT_URL} - TAVILY_API_KEY=${TAVILY_API_KEY} ports: diff --git a/poetry.lock b/poetry.lock index ac4bb74..c4c9ae6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -269,13 +269,13 @@ test = ["distro (>=1.9.0,<1.10.0)", "flake8 (>=6.1,<7.0)", "flake8-pyi (>=24.1.0 [[package]] name = "attrs" -version = "24.3.0" +version = "25.1.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.8" files = [ - {file = "attrs-24.3.0-py3-none-any.whl", hash = "sha256:ac96cd038792094f438ad1f6ff80837353805ac950cd2aa0e0625ef19850c308"}, - {file = "attrs-24.3.0.tar.gz", hash = "sha256:8f5c07333d543103541ba7be0e2ce16eeee8130cb0b3f9238ab904ce1e85baff"}, + {file = "attrs-25.1.0-py3-none-any.whl", hash = "sha256:c75a69e28a550a7e93789579c22aa26b0f5b83b75dc4e08fe092980051e1090a"}, + {file = "attrs-25.1.0.tar.gz", hash = "sha256:1c97078a80c814273a76b2a298a932eb681c87415c11dee0a6921de7f1b02c3e"}, ] [package.extras] @@ -392,17 +392,17 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "boto3" -version = "1.36.3" +version = "1.36.7" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.36.3-py3-none-any.whl", hash = "sha256:f9843a5d06f501d66ada06f5a5417f671823af2cf319e36ceefa1bafaaaaa953"}, - {file = "boto3-1.36.3.tar.gz", hash = "sha256:53a5307f6a3526ee2f8590e3c45efa504a3ea4532c1bfe4926c0c19bf188d141"}, + {file = "boto3-1.36.7-py3-none-any.whl", hash = "sha256:ab501f75557863e2d2c9fa731e4fe25c45f35e0d92ea0ee11a4eaa63929d3ede"}, + {file = "boto3-1.36.7.tar.gz", hash = "sha256:ae98634efa7b47ced1b0d7342e2940b32639eee913f33ab406590b8ed55ee94b"}, ] [package.dependencies] -botocore = ">=1.36.3,<1.37.0" +botocore = ">=1.36.7,<1.37.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.11.0,<0.12.0" @@ -411,13 +411,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.36.3" +version = "1.36.7" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" files = [ - {file = "botocore-1.36.3-py3-none-any.whl", hash = "sha256:536ab828e6f90dbb000e3702ac45fd76642113ae2db1b7b1373ad24104e89255"}, - {file = "botocore-1.36.3.tar.gz", hash = "sha256:775b835e979da5c96548ed1a0b798101a145aec3cd46541d62e27dda5a94d7f8"}, + {file = "botocore-1.36.7-py3-none-any.whl", hash = "sha256:a6c6772d777af2957ac9975207fac1ccc4ce101408b85e9b5e3c5ba0bb949102"}, + {file = "botocore-1.36.7.tar.gz", hash = "sha256:9abc64bde5e7d8f814ea91d6fc0a8142511fc96427c19fe9209677c20a0c9e6e"}, ] [package.dependencies] @@ -554,13 +554,13 @@ pycparser = "*" [[package]] name = "chainlit" -version = "2.0.3" +version = "2.0.602" description = "Build Conversational AI." optional = false python-versions = "<4.0.0,>=3.9" files = [ - {file = "chainlit-2.0.3-py3-none-any.whl", hash = "sha256:d177b5e2e9cf55cb93a864e932cd30e6277aabdb11eb957a5f8f7111bc5275e8"}, - {file = "chainlit-2.0.3.tar.gz", hash = "sha256:a312879420f470eeeffff27823c70a20cace1d32ff5bb4f103b537870fa8b0a0"}, + {file = "chainlit-2.0.602-py3-none-any.whl", hash = "sha256:c79292f2ae338cfbf6935277579e33a2d108b0621e3121e08beb8676bdb6dae7"}, + {file = "chainlit-2.0.602.tar.gz", hash = "sha256:198f0f2524916c16663edf44171bce72294758dc40f645df6b6ec267847b8909"}, ] [package.dependencies] @@ -574,7 +574,7 @@ httpx = ">=0.23.0" lazify = ">=0.4.0,<0.5.0" literalai = "0.1.103" nest-asyncio = ">=1.6.0,<2.0.0" -packaging = ">=23.1,<24.0" +packaging = ">=23.1" pydantic = ">=1,<3" pyjwt = ">=2.8.0,<3.0.0" python-dotenv = ">=1.0.0,<2.0.0" @@ -584,7 +584,7 @@ starlette = ">=0.41.2,<0.42.0" syncer = ">=2.0.3,<3.0.0" tomli = ">=2.0.1,<3.0.0" uptrace = ">=1.22.0,<2.0.0" -uvicorn = ">=0.25.0,<0.26.0" +uvicorn = ">=0.25.0" watchfiles = ">=0.20.0,<0.21.0" [[package]] @@ -882,20 +882,20 @@ vision = ["Pillow (>=9.4.0)"] [[package]] name = "deprecated" -version = "1.2.15" +version = "1.2.18" description = "Python @deprecated decorator to deprecate old python classes, functions or methods." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" files = [ - {file = "Deprecated-1.2.15-py2.py3-none-any.whl", hash = "sha256:353bc4a8ac4bfc96800ddab349d89c25dec1079f65fd53acdcc1e0b975b21320"}, - {file = "deprecated-1.2.15.tar.gz", hash = "sha256:683e561a90de76239796e6b6feac66b99030d2dd3fcf61ef996330f14bbb9b0d"}, + {file = "Deprecated-1.2.18-py2.py3-none-any.whl", hash = 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(>=0.5.0)", "python-dotenv (>=0.13)", "pyyaml (>=5.1)", "uvloop (>=0.14.0,!=0.15.0,!=0.15.1)", "watchfiles (>=0.13)", "websockets (>=10.4)"] +standard = ["colorama (>=0.4)", "httptools (>=0.6.3)", "python-dotenv (>=0.13)", "pyyaml (>=5.1)", "uvloop (>=0.14.0,!=0.15.0,!=0.15.1)", "watchfiles (>=0.13)", "websockets (>=10.4)"] [[package]] name = "uvloop" @@ -6070,4 +6055,4 @@ cffi = ["cffi (>=1.11)"] [metadata] lock-version = "2.0" python-versions = ">=3.12, <4" -content-hash = "aba28397d40eaa964618c7021a211a61ee03de9b7114febfc6390b19bc0f70fa" +content-hash = "5b1f865d119b14bd9b18d319d3e20422de1fed9eb3cacbef5e92dbb3594cdf3e" diff --git a/pyproject.toml b/pyproject.toml index 8eebad1..2c1f087 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,7 +23,7 @@ langchain-openai = "^0.2.3" neo4j = "4.3.6" python-dotenv = "^1.0.1" pyfiglet = "^1.0.2" -chainlit = "2.0.3" +chainlit = "^2.0.3" asyncpg = "^0.30.0" sqlalchemy = "^2.0.30" langchain-community = "^0.3.3" diff --git a/src/conversational_chain/graph.py b/src/conversational_chain/graph.py index 166ac70..38ac7da 100644 --- a/src/conversational_chain/graph.py +++ b/src/conversational_chain/graph.py @@ -115,7 +115,7 @@ async def postprocess( if config["configurable"]["enable_postprocess"]: result: dict[str, Any] = await self.search_workflow.ainvoke( {"question": state["input"], "generation": state["answer"]}, - # config=RunnableConfig(callbacks=config["callbacks"]), + config=RunnableConfig(callbacks=config["callbacks"]), ) search_results = result["search_results"] return { diff --git a/src/external_search/completeness_grader.py b/src/external_search/completeness_grader.py index 8528b27..837c88e 100644 --- a/src/external_search/completeness_grader.py +++ b/src/external_search/completeness_grader.py @@ -1,8 +1,10 @@ from langchain_core.language_models.chat_models import BaseChatModel from langchain_core.prompts import ChatPromptTemplate -from langchain_core.runnables import Runnable +from langchain_core.runnables import Runnable, RunnableConfig from pydantic import BaseModel, Field +from external_search.state import GraphState + completeness_grader_message = """ You are an expert grader with extensive knowledge in molecular biology and experience as a Reactome curator. Your task is to evaluate whether a response generated by an LLM is complete, meaning it fully addresses the user’s query with all necessary details, background information, and context. @@ -27,7 +29,7 @@ class GradeCompleteness(BaseModel): - external_search: str = Field( + binary_score: str = Field( description="Answer is complete and provides all necessary background, 'Yes' or 'No'" ) @@ -38,3 +40,15 @@ def __init__(self, llm: BaseChatModel): GradeCompleteness ) self.runnable: Runnable = completeness_prompt | structured_completeness_grader + + async def ainvoke( + self, state: GraphState, config: RunnableConfig + ) -> dict[str, str]: + result: GradeCompleteness = await self.runnable.ainvoke( + { + "question": state["question"], + "generation": state["generation"], + }, + config, + ) + return {"external_search": result.binary_score} diff --git a/src/external_search/workflow.py b/src/external_search/workflow.py index 8bebc28..90c8f48 100644 --- a/src/external_search/workflow.py +++ b/src/external_search/workflow.py @@ -27,7 +27,7 @@ def create_search_workflow( workflow = StateGraph(GraphState) # Add nodes - workflow.add_node("assess_completeness", completeness_grader.runnable) + workflow.add_node("assess_completeness", completeness_grader.ainvoke) workflow.add_node("perform_web_search", tavily_wrapper.ainvoke) workflow.add_node("no_search", no_search) diff --git a/src/retreival_chain.py b/src/retreival_chain.py index 1bb7ab6..e37350a 100644 --- a/src/retreival_chain.py +++ b/src/retreival_chain.py @@ -12,11 +12,14 @@ from langchain_community.document_loaders.csv_loader import CSVLoader from langchain_community.retrievers import BM25Retriever from langchain_core.embeddings import Embeddings +from langchain_core.language_models.chat_models import BaseChatModel from langchain_core.retrievers import BaseRetriever from langchain_huggingface import (HuggingFaceEmbeddings, HuggingFaceEndpointEmbeddings) from langchain_ollama.chat_models import ChatOllama -from langchain_openai import ChatOpenAI, OpenAIEmbeddings +from langchain_openai.chat_models.base import BaseChatOpenAI, ChatOpenAI +from langchain_openai.embeddings import OpenAIEmbeddings +from pydantic import SecretStr from conversational_chain.graph import RAGGraphWithMemory from reactome.metadata_info import descriptions_info, field_info @@ -54,20 +57,30 @@ def get_embedding( def create_retrieval_chain( env: str, embeddings_directory: Path, - commandline: bool, - verbose: bool, + *, + commandline: bool = False, + verbose: bool = False, ollama_model: Optional[str] = None, ollama_url: str = "http://localhost:11434", hf_model: Optional[str] = None, + ds_model: Optional[str] = None, device: str = "cpu", ) -> RAGGraphWithMemory: callbacks: list[BaseCallbackHandler] = [] if commandline: callbacks = [StreamingStdOutCallbackHandler()] - # Define llm without redefinition - llm: ChatOllama | ChatOpenAI - if ollama_model is None: # Use OpenAI when Ollama not specified + llm: BaseChatModel + if ds_model and "DEEPSEEK_API_KEY" in os.environ: + llm = BaseChatOpenAI( + model=ds_model, + api_key=SecretStr(os.environ["DEEPSEEK_API_KEY"]), + base_url="https://api.deepseek.com", + temperature=0.0, + callbacks=callbacks, + verbose=verbose, + ) + elif ollama_model is None: # Use OpenAI when Ollama not specified llm = ChatOpenAI( temperature=0.0, callbacks=callbacks, diff --git a/src/util/chainlit_helpers.py b/src/util/chainlit_helpers.py index b3cc48c..48fe2a3 100644 --- a/src/util/chainlit_helpers.py +++ b/src/util/chainlit_helpers.py @@ -1,11 +1,13 @@ +import os from datetime import datetime from typing import Any, Iterable import chainlit as cl -import chainlit.data as cl_data +from chainlit.data import get_data_layer from langchain_community.callbacks import OpenAICallbackHandler from util.config_yml import Config, TriggerEvent +from util.config_yml.usage_limits import MessageRate guest_user_metadata: dict[str, Any] = {} @@ -67,20 +69,29 @@ async def message_rate_limited(config: Config | None) -> bool: return False user_id: str | None = get_user_id() message_times_queue: list[str] = get_user_metadata("message_times_queue", []) - is_limited: bool = config.get_message_rate_usage_limited( + rate_limit: MessageRate | None = config.get_message_rate_usage_limited( user_id, message_times_queue ) - if is_limited: + if rate_limit: + quota_message: str if user_id: - await send_messages( - ["User messages quota reached. Please try again later."] + quota_message = ( + "User messages quota reached. " + f"You are allowed a maximum of {rate_limit.max_messages} messages every {rate_limit.interval}." ) else: - await send_messages( - ["Public messages quota reached. Please try again later."] - ) + quota_message = "Public messages quota reached. " + login_uri: str | None = os.getenv("CHAINLIT_URI_LOGIN", "") + if login_uri: + quota_message += ( + f"[Log in]({login_uri}) to continue chatting with fewer limits." + ) + else: + quota_message += "Please try again later." + await send_messages([quota_message]) set_user_metadata("message_times_queue", message_times_queue) - return is_limited + await update_user() + return rate_limit is not None async def send_messages(messages: Iterable[str]) -> None: @@ -134,4 +145,4 @@ async def update_search_results( async def update_user() -> None: user: cl.User | None = cl.user_session.get("user") if user: - await cl_data.get_data_layer().create_user(user) + await get_data_layer().create_user(user) diff --git a/src/util/config_yml/__init__.py b/src/util/config_yml/__init__.py index 5a4dcf4..623588d 100644 --- a/src/util/config_yml/__init__.py +++ b/src/util/config_yml/__init__.py @@ -53,12 +53,12 @@ def get_message_rate_usage_limited( self, user_id: str | None = None, message_times_queue: list[str] = [], - ) -> bool: + ) -> MessageRate | None: message_rate: MessageRate for message_rate in self.usage_limits.message_rates: if match_user(message_rate.users, user_id): return message_rate.check_rate(message_times_queue) - return False # not rate limited + return None # not rate limited @classmethod def from_yaml(cls, config_yml: Path = CONFIG_YML) -> Self | None: diff --git a/src/util/config_yml/usage_limits.py b/src/util/config_yml/usage_limits.py index 8a98447..81460a8 100644 --- a/src/util/config_yml/usage_limits.py +++ b/src/util/config_yml/usage_limits.py @@ -1,4 +1,5 @@ from datetime import datetime +from typing import Self from pydantic import BaseModel @@ -10,7 +11,7 @@ class MessageRate(BaseModel): max_messages: int interval: str - def check_rate(self, message_times_queue: list[str]): + def check_rate(self, message_times_queue: list[str]) -> Self | None: now = datetime.now() while len(message_times_queue) > 0: if now - datetime.fromisoformat(message_times_queue[0]) > parse_interval( @@ -21,9 +22,9 @@ def check_rate(self, message_times_queue: list[str]): break if len(message_times_queue) < self.max_messages: message_times_queue.append(now.isoformat()) - return False # not rate limited + return None # not rate limited else: - return True + return self class UsageLimits(BaseModel):