From 33b71e346fe4dc0fd3f097c0f1a7270083cc5a63 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 27 Apr 2026 19:51:38 +0000 Subject: [PATCH] Bump @modelcontextprotocol/sdk Bumps the runtime-patch-minor group with 1 update in the / directory: [@modelcontextprotocol/sdk](https://github.com/modelcontextprotocol/typescript-sdk). Updates `@modelcontextprotocol/sdk` from 1.25.3 to 1.29.0 - [Release notes](https://github.com/modelcontextprotocol/typescript-sdk/releases) - [Commits](https://github.com/modelcontextprotocol/typescript-sdk/compare/v1.25.3...v1.29.0) --- updated-dependencies: - dependency-name: "@modelcontextprotocol/sdk" dependency-version: 1.29.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: runtime-patch-minor ... Signed-off-by: dependabot[bot] --- package-lock.json | 80 ++++++++++++++++++++++++++++++----------------- package.json | 2 +- 2 files changed, 52 insertions(+), 30 deletions(-) diff --git a/package-lock.json b/package-lock.json index 7620088..b24e985 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,15 +1,15 @@ { "name": "reactome-mcp", - "version": "1.0.0", + "version": "1.4.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "reactome-mcp", - "version": "1.0.0", + "version": "1.4.0", "license": "Apache-2.0", "dependencies": { - "@modelcontextprotocol/sdk": "^1.12.0", + "@modelcontextprotocol/sdk": "^1.29.0", "neo4j-driver": "^5.28.3", "zod": "^3.25.0" }, @@ -79,9 +79,9 @@ "license": "MIT" }, "node_modules/@modelcontextprotocol/sdk": { - "version": "1.25.3", - "resolved": "https://registry.npmjs.org/@modelcontextprotocol/sdk/-/sdk-1.25.3.tgz", - "integrity": "sha512-vsAMBMERybvYgKbg/l4L1rhS7VXV1c0CtyJg72vwxONVX0l4ZfKVAnZEWTQixJGTzKnELjQ59e4NbdFDALRiAQ==", + "version": "1.29.0", + "resolved": "https://registry.npmjs.org/@modelcontextprotocol/sdk/-/sdk-1.29.0.tgz", + "integrity": "sha512-zo37mZA9hJWpULgkRpowewez1y6ML5GsXJPY8FI0tBBCd77HEvza4jDqRKOXgHNn867PVGCyTdzqpz0izu5ZjQ==", "license": "MIT", "dependencies": { "@hono/node-server": "^1.19.9", @@ -92,14 +92,15 @@ "cross-spawn": "^7.0.5", "eventsource": "^3.0.2", "eventsource-parser": "^3.0.0", - "express": "^5.0.1", - "express-rate-limit": "^7.5.0", - "jose": "^6.1.1", + "express": "^5.2.1", + "express-rate-limit": "^8.2.1", + "hono": "^4.11.4", + "jose": "^6.1.3", "json-schema-typed": "^8.0.2", "pkce-challenge": "^5.0.0", "raw-body": "^3.0.0", "zod": "^3.25 || ^4.0", - "zod-to-json-schema": "^3.25.0" + "zod-to-json-schema": "^3.25.1" }, "engines": { "node": ">=18" @@ -749,9 +750,9 @@ } }, "node_modules/content-disposition": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/content-disposition/-/content-disposition-1.0.1.tgz", - "integrity": "sha512-oIXISMynqSqm241k6kcQ5UwttDILMK4BiurCfGEREw6+X9jkkpEe5T9FZaApyLGGOnFuyMWZpdolTXMtvEJ08Q==", + "version": "1.1.0", + "resolved": "https://registry.npmjs.org/content-disposition/-/content-disposition-1.1.0.tgz", + "integrity": "sha512-5jRCH9Z/+DRP7rkvY83B+yGIGX96OYdJmzngqnw2SBSxqCFPd0w2km3s5iawpGX8krnwSGmF0FW5Nhr0Hfai3g==", "license": "MIT", "engines": { "node": ">=18" @@ -1028,10 +1029,13 @@ } }, "node_modules/express-rate-limit": { - "version": "7.5.1", - "resolved": "https://registry.npmjs.org/express-rate-limit/-/express-rate-limit-7.5.1.tgz", - "integrity": "sha512-7iN8iPMDzOMHPUYllBEsQdWVB6fPDMPqwjBaFrgr4Jgr/+okjvzAy+UHlYYL/Vs0OsOrMkwS6PJDkFlJwoxUnw==", + "version": "8.4.1", + "resolved": "https://registry.npmjs.org/express-rate-limit/-/express-rate-limit-8.4.1.tgz", + "integrity": "sha512-NGVYwQSAyEQgzxX1iCM978PP9AdO/hW93gMcF6ZwQCm+rFvLsBH6w4xcXWTcliS8La5EPRN3p9wzItqBwJrfNw==", "license": "MIT", + "dependencies": { + "ip-address": "10.1.0" + }, "engines": { "node": ">= 16" }, @@ -1207,9 +1211,9 @@ } }, "node_modules/hasown": { - "version": "2.0.2", - "resolved": "https://registry.npmjs.org/hasown/-/hasown-2.0.2.tgz", - "integrity": "sha512-0hJU9SCPvmMzIBdZFqNPXWa6dqh7WdH0cII9y+CyS8rG3nL48Bclra9HmKhVVUHyPWNH5Y7xDwAB7bfgSjkUMQ==", + "version": "2.0.3", + "resolved": "https://registry.npmjs.org/hasown/-/hasown-2.0.3.tgz", + "integrity": "sha512-ej4AhfhfL2Q2zpMmLo7U1Uv9+PyhIZpgQLGT1F9miIGmiCJIoCgSmczFdrc97mWT4kVY72KA+WnnhJ5pghSvSg==", "license": "MIT", "dependencies": { "function-bind": "^1.1.2" @@ -1218,6 +1222,15 @@ "node": ">= 0.4" } }, + "node_modules/hono": { + "version": "4.12.15", + "resolved": "https://registry.npmjs.org/hono/-/hono-4.12.15.tgz", + "integrity": "sha512-qM0jDhFEaCBb4TxoW7f53Qrpv9RBiayUHo0S52JudprkhvpjIrGoU1mnnr29Fvd1U335ZFPZQY1wlkqgfGXyLg==", + "license": "MIT", + "engines": { + "node": ">=16.9.0" + } + }, "node_modules/http-errors": { "version": "2.0.1", "resolved": "https://registry.npmjs.org/http-errors/-/http-errors-2.0.1.tgz", @@ -1280,6 +1293,15 @@ "integrity": "sha512-k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ==", "license": "ISC" }, + "node_modules/ip-address": { + "version": "10.1.0", + "resolved": "https://registry.npmjs.org/ip-address/-/ip-address-10.1.0.tgz", + "integrity": "sha512-XXADHxXmvT9+CRxhXg56LJovE+bmWnEWB78LB83VZTprKTmaC5QfruXocxzTZ2Kl0DNwKuBdlIhjL8LeY8Sf8Q==", + "license": "MIT", + "engines": { + "node": ">= 12" + } + }, "node_modules/ipaddr.js": { "version": "1.9.1", "resolved": "https://registry.npmjs.org/ipaddr.js/-/ipaddr.js-1.9.1.tgz", @@ -1782,9 +1804,9 @@ } }, "node_modules/path-to-regexp": { - "version": "8.3.0", - "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-8.3.0.tgz", - "integrity": "sha512-7jdwVIRtsP8MYpdXSwOS0YdD0Du+qOoF/AEPIt88PcCFrZCzx41oxku1jD88hZBwbNUIEfpqvuhjFaMAqMTWnA==", + "version": "8.4.2", + "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-8.4.2.tgz", + "integrity": "sha512-qRcuIdP69NPm4qbACK+aDogI5CBDMi1jKe0ry5rSQJz8JVLsC7jV8XpiJjGRLLol3N+R5ihGYcrPLTno6pAdBA==", "license": "MIT", "funding": { "type": "opencollective", @@ -1870,9 +1892,9 @@ } }, "node_modules/qs": { - "version": "6.14.1", - "resolved": "https://registry.npmjs.org/qs/-/qs-6.14.1.tgz", - "integrity": "sha512-4EK3+xJl8Ts67nLYNwqw/dsFVnCf+qR7RgXSK9jEEm9unao3njwMDdmsdvoKBKHzxd7tCYz5e5M+SnMjdtXGQQ==", + "version": "6.15.1", + "resolved": "https://registry.npmjs.org/qs/-/qs-6.15.1.tgz", + "integrity": "sha512-6YHEFRL9mfgcAvql/XhwTvf5jKcOiiupt2FiJxHkiX1z4j7WL8J/jRHYLluORvc1XxB5rV20KoeK00gVJamspg==", "license": "BSD-3-Clause", "dependencies": { "side-channel": "^1.1.0" @@ -2094,13 +2116,13 @@ } }, "node_modules/side-channel-list": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/side-channel-list/-/side-channel-list-1.0.0.tgz", - "integrity": "sha512-FCLHtRD/gnpCiCHEiJLOwdmFP+wzCmDEkc9y7NsYxeF4u7Btsn1ZuwgwJGxImImHicJArLP4R0yX4c2KCrMrTA==", + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/side-channel-list/-/side-channel-list-1.0.1.tgz", + "integrity": "sha512-mjn/0bi/oUURjc5Xl7IaWi/OJJJumuoJFQJfDDyO46+hBWsfaVM65TBHq2eoZBhzl9EchxOijpkbRC8SVBQU0w==", "license": "MIT", "dependencies": { "es-errors": "^1.3.0", - "object-inspect": "^1.13.3" + "object-inspect": "^1.13.4" }, "engines": { "node": ">= 0.4" diff --git a/package.json b/package.json index 80e5156..2b5b43f 100644 --- a/package.json +++ b/package.json @@ -34,7 +34,7 @@ "author": "", "license": "Apache-2.0", "dependencies": { - "@modelcontextprotocol/sdk": "^1.12.0", + "@modelcontextprotocol/sdk": "^1.29.0", "neo4j-driver": "^5.28.3", "zod": "^3.25.0" },