diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 40433b0f0f9d3..6b47cca9afbe2 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -247,7 +247,7 @@ repos:
       - id: setup-extra-packages
         name: Checks if all the libraries in setup.py are listed in extra-packages-ref.rst file
         language: python
-        files: ^setup.py$|^docs/extra-packages-ref.rst$
+        files: ^setup.py$|^docs/apache-airflow/extra-packages-ref.rst$
         pass_filenames: false
         entry: ./scripts/ci/pre_commit/pre_commit_check_setup_extra_packages_ref.py
         additional_dependencies: ['rich==9.2.0']
diff --git a/scripts/ci/pre_commit/pre_commit_check_setup_extra_packages_ref.py b/scripts/ci/pre_commit/pre_commit_check_setup_extra_packages_ref.py
index 4dee47c5d6aab..e0a5a12a6ad42 100755
--- a/scripts/ci/pre_commit/pre_commit_check_setup_extra_packages_ref.py
+++ b/scripts/ci/pre_commit/pre_commit_check_setup_extra_packages_ref.py
@@ -82,7 +82,7 @@ def get_extras_from_docs() -> List[str]:
     """
     Returns an array of install packages names from installation.rst.
     """
-    docs_content = get_file_content('docs', DOCS_FILE)
+    docs_content = get_file_content('docs', 'apache-airflow', DOCS_FILE)
 
     extras_section_regex = re.compile(
         rf'^\|[^|]+\|.*pip install .apache-airflow\[({PY_IDENTIFIER})\].', re.MULTILINE