diff --git a/ontologies.Makefile b/ontologies.Makefile
index f96c11d..87ec914 100644
--- a/ontologies.Makefile
+++ b/ontologies.Makefile
@@ -174,6 +174,61 @@ db/comploinc.owl: download/comploinc.owl
 	robot relax -i $< merge -o $@
 
 
+download/hba.owl: STAMP
+	curl -L -s https://github.com/brain-bican/human_brain_atlas_ontology/raw/main/hbao-base.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/hba.owl
+
+db/hba.owl: download/hba.owl
+	cp $< $@
+
+
+download/mba.owl: STAMP
+	curl -L -s https://github.com/brain-bican/mouse_brain_atlas_ontology/raw/main/mbao-base.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/mba.owl
+
+db/mba.owl: download/mba.owl
+	cp $< $@
+
+
+download/dmba.owl: STAMP
+	curl -L -s https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/raw/main/dmbao-base.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/dmba.owl
+
+db/dmba.owl: download/dmba.owl
+	cp $< $@
+
+
+download/dhba.owl: STAMP
+	curl -L -s https://github.com/brain-bican/developing_human_brain_atlas_ontology/raw/main/dhbao-base.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/dhba.owl
+
+db/dhba.owl: download/dhba.owl
+	cp $< $@
+
+
+download/pba.owl: STAMP
+	curl -L -s https://github.com/brain-bican/primate_brain_atlas_ontology/raw/main/pbao-base.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/pba.owl
+
+db/pba.owl: download/pba.owl
+	cp $< $@
+
+
 download/bero.owl: STAMP
 	curl -L -s https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl > $@.tmp
 	sha256sum -b $@.tmp > $@.sha256
@@ -1262,4 +1317,4 @@ download/%.owl: STAMP
 db/%.owl: download/%.owl
 	robot merge -i $< -o $@
 
-EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio pride modl phenio phenio_test comploinc bero aio reacto xsmo bcio icd10who ordo gard mondo-ingest oeo envthes wifire taxslim goldterms sdgio kin biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo fhkb dbpendiaont uberoncm icd10cm omim co_324 ppeo interpro hgnc.genegroup hgnc sgd dictybase eccode uniprot rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context ontie ecosim nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time
+EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio pride modl phenio phenio_test comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio icd10who ordo gard mondo-ingest oeo envthes wifire taxslim goldterms sdgio kin biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo fhkb dbpendiaont uberoncm icd10cm omim co_324 ppeo interpro hgnc.genegroup hgnc sgd dictybase eccode uniprot rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context ontie ecosim nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time
diff --git a/src/semsql/builder/prefixes/prefixes.csv b/src/semsql/builder/prefixes/prefixes.csv
index 9fa4fa5..16ac6f3 100644
--- a/src/semsql/builder/prefixes/prefixes.csv
+++ b/src/semsql/builder/prefixes/prefixes.csv
@@ -85,6 +85,11 @@ modl,https://archive.org/services/purl/purl/modular_ontology_design_library#
 biolink,https://w3id.org/biolink/vocab/
 biolink,https://w3id.org/biolink/vocab/
 loinc,https://loinc.org/
+HBA,https://purl.brain-bican.org/ontology/hbao/HBA_
+MBA,https://purl.brain-bican.org/ontology/mbao/MBA_
+DMBA,https://purl.brain-bican.org/ontology/dmbao/DMBA_
+DHBA,https://purl.brain-bican.org/ontology/dhbao/DHBA_
+PBA,https://purl.brain-bican.org/ontology/pbao/PBA_
 XSMO,http://purl.obolibrary.org/obo/XSMO_
 BCIO,http://humanbehaviourchange.org/ontology/BCIO_
 BCIOR,http://humanbehaviourchange.org/ontology/BCIOR_
@@ -163,6 +168,7 @@ pathbank,http://purl.obolibrary.org/obo/pathbank_
 pathbank,http://purl.obolibrary.org/obo/kegg.genome_
 MESH,http://id.nlm.nih.gov/mesh/
 RXNORM,http://purl.bioontology.org/ontology/RXNORM/
+VCCF,http://purl.obolibrary.org/obo/VCCF_
 OBT,http://purl.obolibrary.org/obo/OBT_
 NANDO,http://nanbyodata.jp/ontology/NANDO_
 ECSO,http://purl.dataone.org/odo/ECSO_
diff --git a/src/semsql/builder/prefixes/prefixes_local.csv b/src/semsql/builder/prefixes/prefixes_local.csv
index b0fb225..7c0060d 100644
--- a/src/semsql/builder/prefixes/prefixes_local.csv
+++ b/src/semsql/builder/prefixes/prefixes_local.csv
@@ -22,6 +22,11 @@ modl,https://archive.org/services/purl/purl/modular_ontology_design_library#
 biolink,https://w3id.org/biolink/vocab/
 biolink,https://w3id.org/biolink/vocab/
 loinc,https://loinc.org/
+HBA,https://purl.brain-bican.org/ontology/hbao/HBA_
+MBA,https://purl.brain-bican.org/ontology/mbao/MBA_
+DMBA,https://purl.brain-bican.org/ontology/dmbao/DMBA_
+DHBA,https://purl.brain-bican.org/ontology/dhbao/DHBA_
+PBA,https://purl.brain-bican.org/ontology/pbao/PBA_
 XSMO,http://purl.obolibrary.org/obo/XSMO_
 BCIO,http://humanbehaviourchange.org/ontology/BCIO_
 BCIOR,http://humanbehaviourchange.org/ontology/BCIOR_
@@ -100,6 +105,7 @@ pathbank,http://purl.obolibrary.org/obo/pathbank_
 pathbank,http://purl.obolibrary.org/obo/kegg.genome_
 MESH,http://id.nlm.nih.gov/mesh/
 RXNORM,http://purl.bioontology.org/ontology/RXNORM/
+VCCF,http://purl.obolibrary.org/obo/VCCF_
 OBT,http://purl.obolibrary.org/obo/OBT_
 NANDO,http://nanbyodata.jp/ontology/NANDO_
 ECSO,http://purl.dataone.org/odo/ECSO_
diff --git a/src/semsql/builder/registry/ontologies.yaml b/src/semsql/builder/registry/ontologies.yaml
index fe10919..a46086a 100644
--- a/src/semsql/builder/registry/ontologies.yaml
+++ b/src/semsql/builder/registry/ontologies.yaml
@@ -101,6 +101,27 @@ ontologies:
     build_command: "robot relax -i $< merge -o $@"
     prefixmap:
       loinc: https://loinc.org/
+  # See https://github.com/obophenotype/uberon/issues/3267
+  hba:
+    url: https://github.com/brain-bican/human_brain_atlas_ontology/raw/main/hbao-base.owl
+    prefixmap:
+      HBA: https://purl.brain-bican.org/ontology/hbao/HBA_
+  mba:
+    url: https://github.com/brain-bican/mouse_brain_atlas_ontology/raw/main/mbao-base.owl
+    prefixmap:
+      MBA: https://purl.brain-bican.org/ontology/mbao/MBA_
+  dmba:
+    url: https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/raw/main/dmbao-base.owl
+    prefixmap:
+      DMBA: https://purl.brain-bican.org/ontology/dmbao/DMBA_
+  dhba:
+    url: https://github.com/brain-bican/developing_human_brain_atlas_ontology/raw/main/dhbao-base.owl
+    prefixmap:
+      DHBA: https://purl.brain-bican.org/ontology/dhbao/DHBA_
+  pba:
+    url: https://github.com/brain-bican/primate_brain_atlas_ontology/raw/main/pbao-base.owl
+    prefixmap:
+      PBA: https://purl.brain-bican.org/ontology/pbao/PBA_
   bero:
     url: https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl
   aio:
@@ -120,10 +141,6 @@ ontologies:
     url: https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd10who.owl
     prefixmap:
       icd10who: https://icd.who.int/browse10/2019/en#/
-  omim:
-    url: https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/omim.owl
-    prefixmap:
-      icd10who: https://icd.who.int/browse10/2019/en#/
   #icd11f:
   #  url: https://github.com/monarch-initiative/icd11/releases/latest/download/icd11foundation.owl
   #  prefixmap:
