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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 377 161

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 468 repositories
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 1 3 0 Updated Feb 20, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 275 10 Updated Feb 20, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 20, 2026
  • CCF-MAP Public

    Primer and examples for using templates and atlases in HMBA/BICAN

    AllenInstitute/CCF-MAP’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 20, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 12 7 Updated Feb 20, 2026
  • PyPeakRankR Public

    Reproducible and extensible feature extraction for ATAC-seq peak ranking.

    AllenInstitute/PyPeakRankR’s past year of commit activity
    Python 0 0 0 0 Updated Feb 20, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 92 3 Updated Feb 20, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 7 MIT 0 0 1 Updated Feb 20, 2026
  • np_notebooks Public
    AllenInstitute/np_notebooks’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Feb 20, 2026
  • np_codeocean Public

    Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean)

    AllenInstitute/np_codeocean’s past year of commit activity
    Python 0 2 0 0 Updated Feb 20, 2026
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